Source code for BioSimSpace.Protocol._minimisation
######################################################################
# BioSimSpace: Making biomolecular simulation a breeze!
#
# Copyright: 2017-2023
#
# Authors: Lester Hedges <lester.hedges@gmail.com>
#
# BioSimSpace is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# BioSimSpace is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with BioSimSpace. If not, see <http://www.gnu.org/licenses/>.
#####################################################################
"""Functionality for minimisation protocols."""
__author__ = "Lester Hedges"
__email__ = "lester.hedges@gmail.com"
__all__ = ["Minimisation"]
import warnings as _warnings
from ._protocol import Protocol as _Protocol
[docs]
class Minimisation(_Protocol):
"""A class for storing minimisation protocols."""
[docs]
def __init__(self, steps=10000):
"""
Constructor.
Parameters
----------
steps : int
The maximum number of steps to perform.
"""
# Call the base class constructor.
super().__init__()
# Set the number of steps.
self.setSteps(steps)
def __str__(self):
"""Return a human readable string representation of the object."""
if self._is_customised:
return "<BioSimSpace.Protocol.Custom>"
else:
return "<BioSimSpace.Protocol.Minimisation: steps=%d>" % self._steps
def __repr__(self):
"""Return a string showing how to instantiate the object."""
if self._is_customised:
return "<BioSimSpace.Protocol.Custom>"
else:
return "BioSimSpace.Protocol.Minimisation(steps=%d)" % self._steps
[docs]
def getSteps(self):
"""
Return the maximum number of steps.
Returns
-------
steps : int
The maximum number of minimisation steps.
"""
return self._steps
[docs]
def setSteps(self, steps):
"""
Set the maximum number of steps.
Parameters
----------
steps : int
The maximum number of minimisation steps.
"""
if not type(steps) is int:
raise TypeError("'steps' must be of type 'int'")
if steps <= 0:
_warnings.warn(
"Number of steps must be greater than zero. Using default (10000)."
)
self._steps = 10000
else:
self._steps = steps